Bioconductor Without Replicate

Showing : without Replicate • reset

vote

replies

3.9k

views

limma edger timecourse without replicate voom

written 9.2 years ago by Camila Orellana ▴ 10

votes

985

views

bsmooth without replicate dimension

7.6 years ago nilaycan • 0

votes

replies

1.5k

views

deseq2 time-series without replicate

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by bahlv • 0

vote

replies

4.0k

views

deseq2 without replicate no replicates

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by Tony • 0

votes

replies

6.7k

views

diffbind bioconductor differential binding analysis without replicate chipseq

8.2 years ago Hesh ▴ 10

votes

replies

3.2k

views

edger differential gene expression without replicate nested design help

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by knipehf • 0

votes

replies

2.1k

views

edgeR differential expression without replicate

9.6 years ago gavin.oliver • 0

votes

replies

1.8k

views

diffbind without replicate

updated 9.9 years ago by Gord Brown ▴ 670 • written 9.9 years ago by yiweihe • 0

votes

replies

3.5k

views

edger without replicate

updated 10.1 years ago by Yunshun Chen ▴ 900 • written 10.1 years ago by Sushant Pawar • 0

vote

1.8k

views

edger without replicate

updated 10.1 years ago by Aaron Lun ★ 29k • written 10.1 years ago by Sushant Pawar • 0

votes

replies

5.8k

views

without Replicate deseq2

updated 4.6 years ago by Michael Love 43k • written 10.2 years ago by Sushant Pawar • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

Awards • All

Popular Question to Guido Hooiveld ★ 4.1k